SHOT vs. 2.0 - Shared Ortholog and Gene Order Tree Reconstruction Tool
Reference: J. O. Korbel, B. Snel, M. A. Huynen, and P. Bork, (2002) SHOT: a web server for the construction of genome phylogenies. Trends Genet. 18:158-162. [SHOT version 2.0 uses orthology information, which is based on the COG database (Tatusov et al., 2001), and was refined by the maintainers of the STRING database as described in von Mering et al., 2003.]
EMBL homepage Biocomputing Unit Bork Group EMBL Heidelberg

The old version of the SHOT server is also still available...


Shot is a web-based tool for the reconstruction of genome phylogenies. See the documentation for more information. In order to use this tool, you must enable JavaScript in your browser. Reconstruction method selected: Gene Content Phylogeny.

Reconstruction method:
Species:
Output format:
Unrooted tree Rooted tree





Advanced Input Parameters:


Normalization value:

Genome size definition:

Distance measure:

Clustering algorithm:

SHOT Phylogeny



Organism Selection:


EUBACTERIA

Tropheryma whipplei TW0827
Streptomyces coelicolor
Mycobacterium leprae
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis H37Rv
Corynebacterium glutamicum
Corynebacterium efficiens
Bifidobacterium longum
Deinococcus radiodurans
Fusobacterium nucleatum
Nostoc sp PCC 7120
Synechocystis sp PCC 6803
Synechococcus elongatus
Leptospira interrogans
Borrelia burgdorferi
Treponema pallidum
Aquifex aeolicus
Chlorobium tepidum
Lactococcus lactis
Streptococcus agalactiae
Streptococcus pneumoniae R6
Streptococcus pneumoniae TIGR4
Streptococcus mutans
Streptococcus pyogenes M3
Streptococcus pyogenes M1
Streptococcus pyogenes M18
Bacillus subtilis
Bacillus halodurans
Oceanobacillus iheyhensis
Listeria monocytogenes
Listeria innocua
Staphylococcus epidermidis
Staphylococcus aureus N315
Staphylococcus aureus MW2
Staphylococcus aureus Mu50
Ureaplasma parvum
Mycoplasma pulmonis
Mycoplasma genitalium
Mycoplasma pneumoniae
Clostridium acetobutylicum
Clostridium perfringens
Thermoanaerobacter tengcongensis
Rickettsia prowazekii
Rickettsia conorii
Mesorhizobium loti
Brucella melitensis
Brucella suis
Bradyrhizobium japonicum
Agrobacterium tumefaciens Wash
Agrobacterium tumefaciens Cereon
Sinorhizobium meliloti
Caulobacter crescentus
Haemophilus influenzae
Pasteurella multocida
Buchnera aphidicola Schiz
Buchnera aphidicola APS
Wigglesworthia brevipalpis
Shewanella oneidensis
Vibrio cholerae
Vibrio vulnificus
Escherichia coli O6
Escherichia coli K12
Escherichia coli EDL933
Escherichia coli O157
Shigella flexneri
Salmonella typhi CT18
Salmonella typhimurium LT2
Yersinia pestis KIM
Yersinia pestis CO92
Pseudomonas putida
Pseudomonas aeruginosa
Neisseria meningitidis A
Neisseria meningitidis B
Ralstonia solanacearum
Xylella fastidiosa
Xanthomonas campestris
Xanthomonas axonopodis
Helicobacter pylori 26695
Helicobacter pylori J99
Campylobacter jejuni
Thermotoga maritima
Chlamydia trachomatis
Chlamydia muridarum
Chlamydophila pneumoniae AR39
Chlamydophila pneumoniae J138
Chlamydophila pneumoniae CWL029

ARCHAEA

Pyrococcus abyssi
Pyrococcus horikoshii
Pyrococcus furiosus
Methanosarcina acetivorans
Methanosarcina mazei
Archaeoglobus fulgidus
Methanococcus jannaschii
Methanopyrus kandleri
Methanothermobacter thermautotr
Thermoplasma acidophilum
Thermoplasma volcanium
Halobacterium sp NRC-1
Pyrobaculum aerophilum
Sulfolobus tokodaii
Sulfolobus solfataricus
Aeropyrum pernix

EUKARYOTAE

Saccharomyces cerevisiae
Schizosaccharomyces pombe
Encephalitozoon cuniculi
Mus musculus
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Arabidopsis thaliana


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