| No. | Definition (codons are indicated in parentheses.) | New_pos (new numbering) |
Revised_pos (old numbering) |
Genbank_pos (old numbering) |
Gene | Comment |
|---|---|---|---|---|---|---|
| 1 | Thr-tRNA(ACC) | complement(156359..156432) | OK | 49369..49442 | mptgt | in Genbank, [tRNA] /note="codon recognized: GGT" and [gene] /note="Thr-tRNA(GGU) gene" are wrong. |
| 2 | Ser-tRNA(AGC) | complement(93052..93140) | OK | 112661..112749 | mptgsb | |
| 3 | Ile-tRNA(ATC) | complement(19155..19231) | 186570..186646 | 186610..186686 | mptgi | |
| 4 | Ala-tRNA(GCA) | complement(19074..19149) | 186652..186727 | 186692..186767 | ------ | in Genbank, "gene" missing. Maybe gene = "mptgi" |
| 5 | Arg-tRNA(AGA) | complement(680400..680475) | OK | 341720..341795 | mptgab | |
| 6 | His-tRNA(CAC) | 643913..643988 | complement(378207..378282) | 378207..378282 | mptgh | |
| 7 | Asn-tRNA(AAC) | complement(562556..562630) | OK | 459565..459639 | mptgv | |
| 8 | Glu-tRNA(GAA) | complement(562471..562547) | OK | 459648..459724 | mptgv | in Genbank, /product="tRNA-Gln" is wrong. |
| 9 | Thr-tRNA(ACG) | complement(562395..562469) | OK | 459726..459800 | mptgv | |
| 10 | Val-tRNA(GTA) | complement(562312..562387) | OK | 459808..459883 | mptgv | |
| 11 | Thr-tRNA(ACA) | complement(562235..562310) | OK | 459885..459960 | mptgv | |
| 12 | Lys-tRNA(AAG) | complement(562147..562222) | OK | 459973..460048 | mptgv | |
| 13 | Leu-tRNA(CTA) | complement(562058..562142) | 460053..460137 | 460053..460136 | mptgv | |
| 14 | Ser-tRNA(TCC) | 555142..555232 | complement(466963..467053) | 467021..467112 | mptgs | |
| 15 | Ser-tRNA(TCG) | 555234..555322 | complement(466873..466961) | 467114..467202 | mptgs | |
| 16 | Trp-tRNA(TGA) | 487394..487468 | OK | complement(534727..534801) | mptgwa | |
| 17 | Tyr-tRNA(TAC) | complement(482649..482735) | 539460..539546 | 539525..539611 | mptrna | |
| 18 | Gln-tRNA(CAA) | complement(482569..482643) | 539552..539626 | 539617..539691 | mptrna | |
| 19 | Lys-tRNA(AAA) | complement(482451..482525) | 539670..539744 | 539735..539809 | mptrna | |
| 20 | Leu-tRNA(TTA) | complement(482365..482450) | 539745..539830 | 539810..539895 | mptrna | |
| 21 | Gly-tRNA(GGA) | complement(482285..482358) | 539837..539910 | 539902..539975 | ------ | In Genbank, "gene" missing. Maybe gene = "mptrna" |
| 22 | Arg-tRNA(CGA) | complement(453260..453336) | OK | 568859..568935 | mptga | |
| 23 | Trp-tRNA(TGG) | 429432..429505 | OK | complement(592690..592763) | mptgg | Is mptgg correct? See Gly-tRNA(GGC) below. |
| 24 | Gly-tRNA(GGC) | complement(427575..427648) | OK | 594547..594620 | mptgg | Is mptgg correct? See Trp-tRNA(TGG) above. |
| 25 | Arg-tRNA(CGC) | 373083..373159 | OK | complement(649036..649112) | mptgac | |
| 26 | Phe-tRNA(TTC) | 358911..358986 | complement(663209..663284) | complement(663123..663198) | ------- | in Genbank, "gene" missing. Maybe gene = "mptgc" |
| 27 | Asp-tRNA(GAC) | 358836..358909 | complement(663286..663359) | complement(663200..663273) | mptgc | in Genbank, /product="tRNA-Asn" is wrong. |
| 28 | fMet-tRNA(ATG) | 358758..358834 | complement(663361..663437) | complement(663275..663351) | mptgc | in Genbank, /product="tRNA-Met" is wrong. |
| 29 | Ser-tRNA(TCA) | 358655..358745 | complement(663450..663540) | complement(663364..663454) | mptgc | |
| 30 | Ile-tRNA(ATG) | 358539..358614 | complement(663581..663656) | complement(663495..663570) | mptgc | in Genbank, /note="codon recognized: CAT" is wrong. |
| 31 | Met-tRNA(ATG) | 358452..358528 | complement(663667..663743) | complement(663579..663653) | mptgc | |
| 32 | Pro-tRNA(CCA) | 358371..358447 | complement(663748..663824) | complement(663692..663739) | mptgc | |
| 33 | Cys-tRNA(TGC) | 358243..358319 | complement(663876..663952) | complement(663791..663869) | mptgc | |
| 34 | Leu-tRNA(CTC) | complement(644970..645055) | 377140..377225 | (ZMBH 377803..377888) | ------- | |
| 35 | Leu-tRNA(TTG) | 648912..648993 | complement(373202..373283) | (ZMBH 373946..373865) | ------- | |
| 36 | Arg-tRNA(AGG) | 429284..429358 | complement(592837..592911) | --------- | ------- | From tRNA database; rna.wustl.edu/GtRDB/Mpn/Mpn-by-locus.html |
| 37 | Ser-tRNA(TCG) | 558635..558723 | complement(463472..463560) | --------- | ------- | From tRNA database; rna.wustl.edu/GtRDB/Mpn/Mpn-by-locus.html |
| 38 | 5S rRNA | 122999..123106 | complement(82695..82802) | No info | ----- | no 5S rRNA in Genbank. The region is selected according to the 5S rRNA DB (rose.man.poznan.pl/5SData). In ZMBH www page, 5'-TTTGG is missing. |
| 39 | 16S rRNA | 118312..119824 | complement(85977..87489) | No info | ----- | The region is selected according to Database of Small Subunit of rRNA and Genbank(acc:M29061). In the ssu DB, 3'-48 more residues to M29061 are expected by alignment of closely related species, so I extended the 48 residue to the region that is coverd by M29061. M29061 lacks 5'-TCA and 3'-56 residues comparing to ZMBH www page. There are 5 mismatchs between the selected region in the genome sequence and M29061 (4 out of 5 is 'N' in M29061). |
| 40 | 23S rRNA | 120057..122961 | complement(82840..85744) | No info | ----- | The region is selected according to Database of Large Subunit of rRNA and Genbank(acc:X68422). X68422 lacks 5'-A but more 3'-179 residues comparing to ZMBH www page. |
| 41 | 4.5S RNA | complement(463876..463954) | 558241..558319 | No info | ----- | S76009 has more 5'-34 and 3'-21 residues comparing to ZMBH www page, but scRNA corresponds to 35-113 of S76009. Then the length is the same as ZMBH. There is one mismatch between the selected region in the genome sequence and S76009. |
| 42 | 10sa RNA | 571825..572211 | complement(449984..450370) | No info | ----- | The sequence in ZMBH www page is complementary strand. About 10sa RNA (tmRNA), see www.indiana.edu/~tmrna. |
| 43 | RNaseP RNA | complement(571431..571801) | 450394..450764 | No info | ----- | The sequence in ZMBH www page is complementary strand. About RNaseP, see www.mbio.ncsu.edu/RNaseP. There is one-residue offset between the sequnece in RNaseP DB and ZMBH. I adopted the position of match with the sequence in RNaseP DB. There are 2 gaps and 1 mismatch between RNaseP in the Mp genome sequence and that in the RNaseP DB. |