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List of known or already predicted attenuation regulation in B. subtilis

   ID Gene name Reference Gene description
1 BS0013 serS 1 seryl-tRNA synthetase
2 BS0038 metS 1 methionyl-tRNA synthetase
3 BS0093 cysE 2 serine acetyltransferase
4 BS0215 glpT 3 glycerol-3-phosphate permease
5 BS0254 yczA 4,5 hypothetical protein
6 BS0643 purE 6 phosphoribosylaminoimidazole carboxylase I
7 BS0927 glpF 7 glycerol uptake facilitator
8 BS0929 glpD 7 glycerol-3-phosphate dehydrogenase
9 BS1101 yitJ 8 hypothetical protein
10 BS1143 trpS 9 tryptophanyl-tRNA synthetase
11 BS1166 tenA 10 transcriptional regulator
12 BS1188 yjcI 8 similar to cystathionine gamma-synthase
13 BS1313 proB 4 gamma-glutamyl kinase
14 BS1319 metC 8 cobalamin-independent methionine synthase
15 BS1357 ykrT 8 hypothetical protein
16 BS1360 ykrW 8 similar to ribulose-bisphosphate carboxylase
17 BS1544 ileS 11 isoleucyl-tRNA synthetase
18 BS1548 pyrR 12 transcriptional attenuator and uracil phosphoribosyltransferase
19 BS1549 pyrP 12 uracil permease
20 BS1550 pyrB 12 aspartate carbamoyltransferase
21 BS1855 yoaD 8 similar to phosphoglycerate dehydrogenase
22 BS2139 yomC 13 similar to N-acetylmuramoyl-L-alanine amidase
23 BS2204 xpt 14 xanthine phosphoribosyltransferase
24 BS2376 yqjO 4 similar to pyrroline-5-carboxylate reductase
25 BS2520 glyQ 11 glycyl-tRNA synthetase (alpha subunit)
26 BS2733 alaS 11 alanyl-tRNA synthetase
27 BS2749 hisS 11 histidyl-tRNA synthetase
28 BS2803 valS 9 valyl-tRNA synthetase
29 BS2825 ilvB 15 acetolactate synthase (acetohydroxy-acid synthase) (large subunit)
30 BS2858 pheS 9,16 phenylalanyl-tRNA synthetase (alpha subunit)
31 BS2889 thrS 4,9,16,17 threonyl-tRNA synthetase
32 BS2961 tyrS 9,16 tyrosyl-tRNA synthetase
33 BS3026 leuS 9,16 leucyl-tRNA synthetase
34 BS3049 metK 8 S-adenosylmethionine synthase
35 BS3269 yusC 8 similar to ABC transporter (ATP-binding protein)
36 BS3396 yvbW 4 similar to amino acid permease
37 BS3440 sacB 18 levansucrase
38 BS3750 thrZ 16 threonyl-tRNA synthetase
39 BS3798 sacP 19 PTS sucrose-specific enzyme IIBC component
40 BS3834 sacX 20 negative regulatory protein of SacY
41 BS3839 tyrZ 16 tyrosyl-tRNA synthetase
42 BS3888 yxjH 8 hypothetical protein
43 BS3889 yxjG 8 hypothetical protein
44 BS3900 bglS 21 endo-beta-1,3-1,4 glucanase
45 BS3920 bglP 22 PTS beta-glucoside-specidic enzyme IIABC component
46 BS3928 hutH 23 histidase


References.
  1. Ogasawara N, Nakai S, Yoshikawa H,
    "Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin",
    DNA Res 1:1-14 (1994).

  2. Gagnon Y, Breton R, Rutzer H, Pelchat M, Grunberg-Manago M, Lapointe J,
    "Clustering and co-transcription of the Bacillus subtilis genes encoding the aminoacyl-tRNA synthetases specific for glutamate and for cysteine and the first enzyme for cysteine biosynthesis",
    J Biol Chem 269:7473-7482 (1994).

  3. Nilsson RP, Beijer L, Rutberg B,
    "The glpT and glpQ genes of the glycerol regulon in Bacillus subtilis",
    Microbiology 140:723-730 (1994).

  4. Chopin A, Biaudet V, Ehrlich SD,
    "Analysis of the Bacillus subtilis genome sequence reveals nine new T-box leaders",
    Mol Microbiol 29:662-664 (1998).

  5. Sarsero JP, Merino E, Yanofsky C,
    "A Bacillus subtilis operon containing genes of unknonw functions senses tRNA(Trp) charging and regulates expression of the genes of tryptophan biosynthesis",
    Proc Natl Acad Sci USA 97:2656-2661 (2000).

  6. Ebbole DJ, Zalkin H,
    "Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis",
    J Biol Chem 262:8274-8287 (1987).

  7. Beijer L, Nilsson RP, Holmberg C, Rutberg L,
    "The glpP and glpF genes of the glycerol regulon in Bacillus subtilis",
    J Gen Microbiol 139:349-359 (1993).

  8. Grundy FJ, Henkin TM,
    "The S box regulon: a new global tarnscription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria",
    Mol Microbiol 30:737-749 (1998).

  9. Grundy FJ, Henkin TM,
    "tRNA as a positive regulator of transcription antitermination in B. subtilis",
    Cell 74:475-482 (1993).

  10. Pang AS, Nathoo S, Wong SL,
    "Cloning and characterization of a pair of novel genes that regulate production of extracellular enzymes in Bacillus subtilis",
    J Bacteriol 173:46-54 (1991).

  11. Chopin A, Biaudet V, Ehrlich SD,
    "Analysis of the Bacillus subtilis genome sequence reveals nine new T-box leaders",
    Mol Microbiol 29:662-664 (1998).

  12. Turner RJ, Lu Y, Switzer RL,
    "Regulation of the Bacillus subtilis pyrimidine biosynthetic (pyr) gene cluster by an autogenous transcriptional attenuation mechanism",
    J Bacteriol 176:3708-3722 (1994).

  13. Soldo B, Lazarevic V, Pagni M, Karamata D,
    "Teichuronic acid operon of Bacillus subtilis 168",
    Mol Microbiol 31:795-805 (1999).

  14. Christiansen LC, Schou S, Nygaard P, Paxild, HH,
    "Xanthine metabolism in Bacillus subtilis: characterization of the xpt-pbuX operon evidence for purine- and nitrogen-controlled expression of genes involved in xanthine salvage and catabolism",
    J Bacteriol 179:2540-2550 (1997).

  15. Grandoni JA, Zahler SA, Calvo JM,
    "Transcriptional regulation of the ilv-leu operon of Bacillus subtilis",
    J Bacteriol 174:3212-3219 (1992).

  16. Grundy FJ, Henkin TM,
    "Conservation of a transcription antitermination mechanism in aminoacyl-tRNA synthetase and amino acid biosynthesis genes in gram-positive bacteria",
    J Mol Biol 235:798-804 (1994).

  17. Gendron N, Putzer H, Grunberg-Manago M,
    "Expression of both Bacillus subtilis threonyl-tRNA synthetase genes is autogenously regulated",
    J Bacteriol 176:486-494 (1994).

  18. Crutz AM, Steinmetz M, Aymerich S, Richter R, Le Coq D,
    "Induction of levansucrase in Bacillus subtilis: an antitermination mechanism negatively controlled by the phosphotransferase system",
    J Bacteriol 172:1043-1050 (1990).

  19. Debarbouille M, Arnaud M, Fouet A, Klier A, Rapoport G,
    "The sacT gene regulating the sacPA operon in Bacillus subtilis shares strong homology with transcriptional antiterminators",
    J Bacteriol 172:3966-3973 (1990).

  20. Tortosa P, Le Coq D,
    "A ribonucleic antiterminator sequence (RAT) and a distant palindrome are both involved in sucrose induction of the Bacillus subtilis sacXY regulatory operon",
    Microbiology 141:2921-2927 (1995).

  21. Schnetz K, Stulke J, Gertz S, Kruger S, Krieg M, Hecker M, Rak B,
    "LicT, a Bacillus subtilis transcriptional antiterminator protein of the BglG family",
    J Bacteriol 178:1971-1979 (1996).

  22. Kruger S, Hecker M,
    "Regulation of the putative bglPH operon for aryl-betaglucoside utilization in Bacillus subtilis",
    J Bacteriol 177:5590-5597 (1995).

  23. Wray LV Jr, Fisher SH,
    "Analysis of Bacillus subtilis hut operon expression indicates that histidine-dependent induction is mediated primarily by transcriptional antitermination and that amino acid repression is mediated by two mechanisms: regulation of transcription initiation and inhibition of histidine transport",
    J Bacteriol 176:5466-5473 (1994).



Reverences (reviews).