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PhD Thesis: Data mining from Scientific Literature
Shah PK
Thesis: header
summary
main text (pdf)
LSAT: Learning about alternative transcripts in MEDLINE
Shah PK and Bork, P
Bioinformatics Submitted
Supplementary/additional material
Extraction of transcript diveristy from scientific literature
Shah PK, Jensen LJ, Boue S and Bork P.
PLoS Computational Biology, In press
LSAT: Literature Support
for Transcript Diversity
Structural similarity to bridge sequence space:finding new
families on the bridges
Shah PK, Aloy P, Bork P, and Russell RB.
Protein Science 14(5), 2005
preprint:pdf
Supplimentry Material: Shah, Aloy, Bork and Russell
PASBio: prediacate-argument structures for event extraction
in molecular biology
Wattarujeekrit, T, Shah PK, and Collier, N.
BMC Bioinformatics 2004, 5:155
preprint:pdf
Database of Semantic Patterns in Biomedical Texts
A protocol for the update of references to scientific
literature in biological databases
Perez-Iratxeta C, Astola N, Ciccareli FD, Shah
PK, Bork P and Andrade MA
Appl Bioinformatics. 2003 2(3):189-91.
PMID: 15130808
Information extraction from full text scientific articles:
Where are the keywords?
Shah PK, Perez-Iratxeta C, Bork P, and
Andrade MA.
BMC Bioinformatics. 2003 May 29;4(1):20.
PMID: 12775220
preprint:pdf
Biological Sequence Analysis and its Applications to Protein
Domains Involved in Signalling
Shah PK
M.Sc. Thesis submitted to Manipal Acedamy Of Higher Education
Thesis Advisory Comittee: Dr. R Sowdhamini, Prof. M K Mathew and Prof.
Jayant Udgaonkar.
chapter1:Introduction
chapter2:Overview of Protein
Structure (Introduction 2)
chapter3:Biological Sequence
Analysis Primer (Introduction 3)
chapter4:Analysis of Ip3R and RyR
chapter5:Analysis of family of TGF
and TGFR
chapter6:Analysis of Drosophila
Masquerade
Structural determinants of binding and specificity in transforming growth factor-receptor interactions.
Shah PK, Buslje CM, and Sowdhamini R.
Proteins. 2001 Dec 1;45(4):408-20
PMID: 11746688
preprint:pdf
Structural understanding of the transmembrane domains of inositol triphosphate receptors and ryanodine receptors towards calcium channeling.
Shah PK, and Sowdhamini R.
Protein Eng. 2001 Nov;14(11):867-74.
PMID: 11742105
preprint:pdf
Japan: Enoshima and
Kamakura
Tokyo_National_Museum_of_Asian_Art