Parantu Shah

MS Bioinformatics
Ph.D. student
in the group of Peer Bork

Biocomputing, EMBL
Meyerhofstr. 1
D-69126 Heidelberg, Germany

email: lastname@workplace.de
tel.: ++49-(0)6221-387456
fax: ++49-(0)6221-387517

  • born: November 3, 1977
  • country of citizenship: India
  • Here is my CV

  • Basics:

  • B.Sc. in Chemistry (with Physics and Mathematics) from The Maharaja SayajiRao University of Baroda, Vadodara.
  • M.Sc. in Life Sciences with specialization in Bioinformatics from National Centre For Biological Sciences, Bangalore, India.

  • Publications:

    PhD Thesis: Data mining from Scientific Literature
    Shah PK
    Thesis: header summary main text (pdf)

    LSAT: Learning about alternative transcripts in MEDLINE
    Shah PK and Bork, P
    Bioinformatics Submitted
    Supplementary/additional material

    Extraction of transcript diveristy from scientific literature
    Shah PK, Jensen LJ, Boue S and Bork P.
    PLoS Computational Biology, In press
    LSAT: Literature Support for Transcript Diversity

    Structural similarity to bridge sequence space:finding new families on the bridges
    Shah PK, Aloy P, Bork P, and Russell RB.
    Protein Science 14(5), 2005
    preprint:pdf

    Supplimentry Material: Shah, Aloy, Bork and Russell

    PASBio: prediacate-argument structures for event extraction in molecular biology
    Wattarujeekrit, T, Shah PK, and Collier, N.
    BMC Bioinformatics 2004, 5:155
    preprint:pdf

    Database of Semantic Patterns in Biomedical Texts

    A protocol for the update of references to scientific literature in biological databases
    Perez-Iratxeta C, Astola N, Ciccareli FD, Shah PK, Bork P and Andrade MA
    Appl Bioinformatics. 2003 2(3):189-91.
    PMID: 15130808

    Information extraction from full text scientific articles: Where are the keywords?
    Shah PK, Perez-Iratxeta C, Bork P, and Andrade MA.
    BMC Bioinformatics. 2003 May 29;4(1):20.
    PMID: 12775220
    preprint:pdf

    Biological Sequence Analysis and its Applications to Protein Domains Involved in Signalling
    Shah PK
    M.Sc. Thesis submitted to Manipal Acedamy Of Higher Education
    Thesis Advisory Comittee: Dr. R Sowdhamini, Prof. M K Mathew and Prof. Jayant Udgaonkar.
    chapter1:Introduction
    chapter2:Overview of Protein Structure (Introduction 2)
    chapter3:Biological Sequence Analysis Primer (Introduction 3)
    chapter4:Analysis of Ip3R and RyR
    chapter5:Analysis of family of TGF and TGFR
    chapter6:Analysis of Drosophila Masquerade

    Structural determinants of binding and specificity in transforming growth factor-receptor interactions.

    Shah PK, Buslje CM, and Sowdhamini R.
    Proteins. 2001 Dec 1;45(4):408-20
    PMID: 11746688
    preprint:pdf

    Structural understanding of the transmembrane domains of inositol triphosphate receptors and ryanodine receptors towards calcium channeling.

    Shah PK, and Sowdhamini R.
    Protein Eng. 2001 Nov;14(11):867-74.
    PMID: 11742105
    preprint:pdf


  • Places that I Digitized
  • Japan: Enoshima and Kamakura

    Tokyo:Asakusa and Ueno

    Kyoto:the real japan

    Tokyo_National_Museum_of_Asian_Art

    France: Paris and Strasbourg



  • For those who understands it :-)
  • GCS/S d- s: a- c++++$ UL+++$ P++++$ E--- W++ N-- O++ !K W++ N-- o+ !K W !O M V PS+ PE++ Y+ PGP+ t+ !5 X+ R- tv++ b+++ DI+ !D G++ e+++(++++) h+ r y+ z?